Research / 02

Microbial Community Assembly

How do microbial communities assemble and function across environmental gradients? My work in this area spans from the phyllosphere to the rhizosphere, examining how fungal and bacterial communities respond to urbanization, land-use change, and experimental manipulation.

As a co-first author with J. Li, I helped reveal how phyllosphere microbiomes and their functional genes shift along urbanization gradients — work published in New Phytologist. At the Cary Institute, I now lead multi-stressor field experiments (SOS Plots) examining how microbe, invertebrate, and plant communities respond independently and interactively to global change factors.

I also investigate the role of canopy soils — often-overlooked reservoirs of organic matter and microbial diversity — in forest nutrient cycling and carbon dynamics.

Microbial isolates from soil community profiling
Related Publications
Co-1st J. Li*, D. F. Petticord*, M. Jin, et al., "From nature to urbanity: Exploring phyllosphere microbiome and functional gene responses to the Anthropocene"
New Phytologist, vol. 244, pp. 1404–1418, 2024
doi: 10.1111/nph.20255 →
Phyllosphere microbiome figure
Co-1st W. Wang*, D. F. Petticord*, S. Zhao, et al., "Conversion from farmland to orchard or agroforestry improves soil carbon sequestration by enhancing microbial biological activity in Northwest China"
PLOS ONE, 2025
Paper figure
G.-C. Hsu [mentee], D. F. Petticord, K. F. Slimon, J. P. Sparks, "Heterospecific-neighbor-mediated changes in density and size increase prey capture by a carnivorous plant"
Oikos, e11309, 2025
doi: 10.1002/oik.11309 →
Paper figure
with J. Li, Y.-G. Zhu & collaborators
J. Li, Y. Zhu, D. F. Petticord, ..., Y.-G. Zhu, "Phyllosphere to soil: How long-term fencing reshapes grassland microbial community construction and their functional genes"
Agriculture, Ecosystems and Environment, vol. 381, p. 110062, 2025
doi: 10.1016/j.agee.2025.110062 →
Paper figure
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Get in touch.
I'm always interested in new collaborations, speaking invitations, and conversations about ecology and sustainability.
petticordd@caryinstitute.org